PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g06710.1
Common NameLR48_Vigan07g050600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 205aa    MW: 22403 Da    PI: 7.5509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g06710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-202676155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++++g
  Vang01g06710.1 26 TRFRGVRKRP-WGRFAAEIRDpWK----KQRVWLGTFDSAEDAARAYDAAARSFRG 76
                    589*******.**********883....5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-182684No hitNo description
PfamPF008472.1E-122676IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-222785IPR016177DNA-binding domain
SMARTSM003806.3E-372790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-312784IPR001471AP2/ERF domain
PROSITE profilePS5103223.4852784IPR001471AP2/ERF domain
PRINTSPR003675.0E-102839IPR001471AP2/ERF domain
PRINTSPR003675.0E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MRRGRATAAV AAVHPSADQE PPTKETRFRG VRKRPWGRFA AEIRDPWKKQ RVWLGTFDSA  60
EDAARAYDAA ARSFRGPKAK TNFPFPNPDT DHSHSQIPLY QAHGLSKFDQ VQVNRPTTSG  120
MSSTVESFSG PRVPSSSTLH PRKPIVNPIV PPLDDCHSDC DSSSSVVEDE DCVLTSSFRQ  180
PLPFDLNLPP PGADDDIPAT ALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-192385164ATERF1
3gcc_A1e-192385164ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503642.11e-146PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803394e-46ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0S3RKA71e-149A0A0S3RKA7_PHAAN; Uncharacterized protein
TrEMBLA0A0L9UW381e-149A0A0L9UW38_PHAAN; Uncharacterized protein
STRINGGLYMA02G43500.11e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-34ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]